Uses of Class
org.strbio.mol.lib.PSIBlastMatrices

Packages that use PSIBlastMatrices

org.strbio.local	These classes are for running or exchanging data with local programs (other programs installed on your computer).
org.strbio.mol	These classes represent objects or concepts useful to structural biologists.
org.strbio.mol.lib	These classes represent conceptual objects used in structural biology algorithms.
org.strbio.net	These classes are for running or exchanging data with non-local programs (i.e., programs that you run by submitting data to a web page).

Uses of PSIBlastMatrices in org.strbio.local

Fields in org.strbio.local declared as PSIBlastMatrices

protected PSIBlastMatrices

PSIBlastP.pbm

Methods in org.strbio.local that return PSIBlastMatrices

PSIBlastMatrices

PSIBlastP.getPSIBlastMatrices() Get scoring matrix.

Methods in org.strbio.local with parameters of type PSIBlastMatrices

void	PSIBlastP.setPSIBlastMatrices(PSIBlastMatrices p) Get scoring matrix.

Uses of PSIBlastMatrices in org.strbio.mol

Methods in org.strbio.mol that return PSIBlastMatrices

PSIBlastMatrices

ProfilePSI.getPSIBlastMatrix() Get the psi-blast matrix back from this profile.

Methods in org.strbio.mol with parameters of type PSIBlastMatrices

void	ProfilePSI.setupPSIBlastMatrix(PSIBlastMatrices p) Set up PSI-blast matrices at each position.

Uses of PSIBlastMatrices in org.strbio.mol.lib

Methods in org.strbio.mol.lib that return PSIBlastMatrices

PSIBlastMatrices

PSIBlast.getPSIBlastMatrices() Should get the matrices used in the last query, or null if there's some problem.

Uses of PSIBlastMatrices in org.strbio.net

Methods in org.strbio.net that return PSIBlastMatrices

PSIBlastMatrices

PSIBlastWeb.getPSIBlastMatrices() Get scoring matrix.