Package org.strbio.local

These classes are for running or exchanging data with local programs (other programs installed on your computer).

See:
Description

Class Summary

Access	Class to run access on a protein.
BlastClient	Runs a local copy of blastclient.
BlastP	Runs a local copy of blastp.
BlastPAdapter	This is an adapter class for Blast which should extend both Program and BlastAdapter.
ClustalW	Class to run clustalw Version 1.0, 8/21/01 - original version
DSSP	Class to run DSSP on a protein.
Ls	Class to run ls Version 1.0, 10/3/02
Malfe	Class to run new minarea front end malfe.
MaxSub	Class to run MaxSub Version 1.0, 10/9/02 - original version
Melting	Class to run melting Version 1.0, 9/10/01 - original version
Mfold	Class to run Mfold Version 1.0, 6/22/06, based on Primer3
Minarea	Class to run minarea.
Modeller	Class to run Modeller Version 1.0, 10/3/02 - original version
Muscle	Class to run Muscle Verions 1.1, 3/30/07 - added ability to pass other options to muscle Version 1.0, 11/27/06 - original version, based on ClustalW
PDB	Class to access a local copy of the PDB.
Primer3	Class to run Primer3 Version 1.0, 6/13/06, based on Modeller
Program	Class to run a program on the local system.
PSIBlastP	Runs a local copy of psiblast.
PSIBlastP2	Runs a local copy of psiblast.
TBlastN	Runs a local copy of tblastn.
VarTom	Class to run var-tom on a protein.

Package org.strbio.local Description

These classes are for running or exchanging data with local programs (other programs installed on your computer).