org.strbio.local
Class Melting

java.lang.Object
  org.strbio.local.Program
      org.strbio.local.Melting

public class Melting
extends Program

Class to run melting

 Version 1.0, 9/10/01 - original version
 

Version:

1.0, 9/10/01

Author:

JMC

Field Summary

Fields inherited from class org.strbio.local.Program

processError, processInput, processOutput, PROGRAM_NAME

Constructor Summary

Melting()

Method Summary

static void	main(java.lang.String[] argv) Looks up sequences on cmd line
java.lang.String	programName() What's the name of this program?
double	tm(java.lang.String dna) return the melting temperature for a dna sequence
double	tm(java.lang.String dna, java.lang.String compl) return the melting temperature for a dna sequence, with given complement.

Methods inherited from class org.strbio.local.Program

clean, exists, run, runBackground, runSilent, setError, setInput, setOutput, setProgramName

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Melting

public Melting()

Method Detail

programName

public final java.lang.String programName()

Description copied from class: Program

What's the name of this program?

Overrides:

programName in class Program

tm

public final double tm(java.lang.String dna)

return the melting temperature for a dna sequence

tm

public final double tm(java.lang.String dna,
                       java.lang.String compl)

return the melting temperature for a dna sequence, with given complement.

main

public static final void main(java.lang.String[] argv)

Looks up sequences on cmd line