org.strbio.local
Class MaxSub

java.lang.Object
  org.strbio.local.Program
      org.strbio.local.MaxSub

public class MaxSub
extends Program

Class to run MaxSub

   Version 1.0, 10/9/02 - original version
   

Version:

1.0, 10/9/02

Author:

JMC

Nested Class Summary

class

MaxSub.Results

Field Summary

Fields inherited from class org.strbio.local.Program

processError, processInput, processOutput, PROGRAM_NAME

Constructor Summary

MaxSub()

Method Summary

static void	main(java.lang.String[] argv)
java.lang.String	programName() What's the name of this program?
MaxSub.Results	run(Protein model, Protein correct) Run maxsub on two proteins, default cutoff is 3.5
MaxSub.Results	run(Protein model, Protein correct, double cutoff) Run maxsub on two proteins

Methods inherited from class org.strbio.local.Program

clean, exists, run, runBackground, runSilent, setError, setInput, setOutput, setProgramName

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MaxSub

public MaxSub()

Method Detail

programName

public final java.lang.String programName()

Description copied from class: Program

What's the name of this program?

Overrides:

programName in class Program

run

public final MaxSub.Results run(Protein model,
                                Protein correct)

Run maxsub on two proteins, default cutoff is 3.5

run

public final MaxSub.Results run(Protein model,
                                Protein correct,
                                double cutoff)

Run maxsub on two proteins

main

public static final void main(java.lang.String[] argv)