org.strbio.mol.lib
Class Pred2ary

java.lang.Object
  org.strbio.mol.lib.Pred2ary

All Implemented Interfaces:

SSPredictor

public class Pred2ary
extends java.lang.Object
implements SSPredictor

Predicts secondary structure using JMC's Pred2ary program.

  Version 1.0, 6/4/99 - original version
  

Version:

1.0, 6/4/99

Author:

JMC

Field Summary

protected Jury

jury

Constructor Summary

Pred2ary()
Initialize using the large jury.

Pred2ary(Jury j)
Initialize with a given jury set.

Method Summary

void	predict(Protein p, Printf outfile) Predicts on a given protein.
void	predict(ProteinSet ps, Printf outfile) Predicts on a given set of proteins.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

jury

protected Jury jury

Constructor Detail

Pred2ary

public Pred2ary()

Initialize using the large jury.

Pred2ary

public Pred2ary(Jury j)

Initialize with a given jury set.

Method Detail

predict

public void predict(Protein p,
                    Printf outfile)
             throws java.io.IOException

Predicts on a given protein. PredStructure in each residue is filled in, along with predH and predE, if possible.

Specified by:

predict in interface SSPredictor

Throws:

java.io.IOException

predict

public void predict(ProteinSet ps,
                    Printf outfile)
             throws java.io.IOException

Predicts on a given set of proteins. PredStructure in each residue is filled in, along with predH and predE, if possible.

Specified by:

predict in interface SSPredictor

Throws:

java.io.IOException