org.strbio.mol.lib
Interface SSPredictor

All Known Implementing Classes:

Pred2ary

public interface SSPredictor

Interface for common secondary structure prediction routines.

  Version 1.0, 6/4/99 - original version
  

Version:

1.0, 6/4/99

Author:

JMC

Method Summary

void	predict(Protein p, Printf outfile) Predicts on a given protein.
void	predict(ProteinSet p, Printf outfile) Predicts on a given set of proteins.

Method Detail

predict

void predict(Protein p,
             Printf outfile)
             throws java.io.IOException

Predicts on a given protein. PredStructure in each residue is filled in, along with predH and predE, if possible.

Throws:

java.io.IOException

predict

void predict(ProteinSet p,
             Printf outfile)
             throws java.io.IOException

Predicts on a given set of proteins. PredStructure in each residue is filled in, along with predH and predE, if possible.

Throws:

java.io.IOException