Uses of Class
org.strbio.local.Program

Packages that use Program

org.strbio.local

These classes are for running or exchanging data with local programs (other programs installed on your computer).

Uses of Program in org.strbio.local

Subclasses of Program in org.strbio.local

class	Access Class to run access on a protein.
class	BlastClient Runs a local copy of blastclient.
class	BlastP Runs a local copy of blastp.
class	BlastPAdapter This is an adapter class for Blast which should extend both Program and BlastAdapter.
class	ClustalW Class to run clustalw Version 1.0, 8/21/01 - original version
class	DSSP Class to run DSSP on a protein.
class	Ls Class to run ls Version 1.0, 10/3/02
class	Malfe Class to run new minarea front end malfe.
class	MaxSub Class to run MaxSub Version 1.0, 10/9/02 - original version
class	Melting Class to run melting Version 1.0, 9/10/01 - original version
class	Mfold Class to run Mfold Version 1.0, 6/22/06, based on Primer3
class	Minarea Class to run minarea.
class	Modeller Class to run Modeller Version 1.0, 10/3/02 - original version
class	Muscle Class to run Muscle Verions 1.1, 3/30/07 - added ability to pass other options to muscle Version 1.0, 11/27/06 - original version, based on ClustalW
class	Primer3 Class to run Primer3 Version 1.0, 6/13/06, based on Modeller
class	PSIBlastP Runs a local copy of psiblast.
class	PSIBlastP2 Runs a local copy of psiblast.
class	TBlastN Runs a local copy of tblastn.
class	VarTom Class to run var-tom on a protein.