Package org.strbio.mol.lib.pred2ary

These classes represent conceptual objects used in the Pred2ary program, which are probably not very useful for other purposes.

See:
Description

Interface Summary

AppletJury.LoadProgressIndicator	Indicator to update with verbose output, after every juror finishes.
Jury.ProgressIndicator	Indicator to update with verbose output, after every juror finishes.

Class Summary

AppletJury	This is a standard jury that is retrieved over the net using an applet's methods.
Jury	Class that implements a jury of secondary structure prediction networks.
LargeJury	The 'large' network set. 120 jurors (level 1 and 2 networks, 15 of which use reduced training) trained on all training sets (0 through 14), 7 unreduced and 1 reduced juror per set.
MediumAppletJury	The 'medium' network set. 8 jurors (level 1 and 2 networks, one of which uses reduced training) trained on training sets 0 through 7 only.
MediumJury	The 'medium' network set. 8 jurors (level 1 and 2 networks, one of which uses reduced training) trained on training sets 0 through 7 only.
PCPRes	ProfRes with a couple extras useful for 2ary structure prediction.
PCPSet	Class to represent a set of profiles with information for 2ary structure prediction.
Pred2aryApplet	Predict secondary structure/class, using profiles.
Pred2aryAppletFrame	Predict secondary structure/class, using profiles.
PredClassProfile	Class to represent a single protein, with class routines and lots of stats.
PredictionSet	Class to represent a set of profiles being used in 2ary structure prediction as a prediction set.
ProfileDisplayArea	This represents an area in object that will want to display some proteins in an area.
SmallAppletJury	The 'small' network set. 1 juror (level 1 and 2 networks), trained on training set 0 only.
SmallJury	The 'small' network set. 1 juror (level 1 and 2 networks), trained on training set 0 only.
StandardJury	Class that implements a jury of secondary structure prediction networks.
TPSet	Class to represent a set of profiles being used in 2ary structure prediction; this might be either a training or prediction set.
TPSet.NetVars	Class with variables used to configure the neural nets.
TrainingSet	Class to represent a set of profiles being used in 2ary structure prediction as a training set.

Package org.strbio.mol.lib.pred2ary Description

These classes represent conceptual objects used in the Pred2ary program, which are probably not very useful for other purposes.