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| Packages that use org.strbio.mol.lib.pred2ary | |
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| org.strbio.mol.lib | These classes represent conceptual objects used in structural biology algorithms. |
| org.strbio.mol.lib.pred2ary | These classes represent conceptual objects used in the Pred2ary program, which are probably not very useful for other purposes. |
| Classes in org.strbio.mol.lib.pred2ary used by org.strbio.mol.lib | |
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| Jury
Class that implements a jury of secondary structure prediction networks. |
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| Classes in org.strbio.mol.lib.pred2ary used by org.strbio.mol.lib.pred2ary | |
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| AppletJury
This is a standard jury that is retrieved over the net using an applet's methods. |
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| AppletJury.LoadProgressIndicator
Indicator to update with verbose output, after every juror finishes. |
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| Jury
Class that implements a jury of secondary structure prediction networks. |
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| Jury.ProgressIndicator
Indicator to update with verbose output, after every juror finishes. |
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| PCPRes
ProfRes with a couple extras useful for 2ary structure prediction. |
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| PCPSet
Class to represent a set of profiles with information for 2ary structure prediction. |
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| Pred2aryApplet
Predict secondary structure/class, using profiles. |
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| Pred2aryAppletFrame
Predict secondary structure/class, using profiles. |
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| Pred2aryAppletFrame.AboutDialog
This gets displayed if user wants to know about the program. |
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| Pred2aryAppletFrame.LoadWindow
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| Pred2aryAppletFrame.ProgressDialog
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| Pred2aryAppletFrame.ProteinPane
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| Pred2aryAppletFrame.SaveWindow
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| PredClassProfile
Class to represent a single protein, with class routines and lots of stats. |
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| PredictionSet
Class to represent a set of profiles being used in 2ary structure prediction as a prediction set. |
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| ProfileDisplayArea
This represents an area in object that will want to display some proteins in an area. |
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| ProfileDisplayArea.ClickedArea
This class keeps track of rectangular areas of interest, and tells which one has been clicked on. |
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| StandardJury
Class that implements a jury of secondary structure prediction networks. |
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| TPSet
Class to represent a set of profiles being used in 2ary structure prediction; this might be either a training or prediction set. |
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| TPSet.NetVars
Class with variables used to configure the neural nets. |
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| TrainingSet
Class to represent a set of profiles being used in 2ary structure prediction as a training set. |
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