Uses of Class
org.strbio.mol.lib.MinareaResults

Packages that use MinareaResults

org.strbio.local	These classes are for running or exchanging data with local programs (other programs installed on your computer).
org.strbio.mol	These classes represent objects or concepts useful to structural biologists.

Uses of MinareaResults in org.strbio.local

Methods in org.strbio.local that return MinareaResults

MinareaResults	Minarea.runOnProteins(Protein a, Protein b) Return a set of results, including alignment.
MinareaResults	Malfe.runOnProteins(Protein a, Protein b) Return a set of results, including alignment.

Uses of MinareaResults in org.strbio.mol

Fields in org.strbio.mol declared as MinareaResults

MinareaResults

AlignmentSet.minareaResults minarea superposition results; assume fold rotated onto sequence.

Methods in org.strbio.mol with parameters of type MinareaResults

void	AlignmentStats.calculate(Alignment correct, Alignment calculated, MinareaResults ma) Calculate all results (that can be), given correct and calculated alignments, and minarea results (for RMS only; can be null to ignore).