org.strbio.mol.lib
Class ScoreScaledID

java.lang.Object
  org.strbio.mol.lib.ScoreScaledID

All Implemented Interfaces:

ScoreFunction

public class ScoreScaledID
extends java.lang.Object
implements ScoreFunction

A scoring function that returns a scaled identity matrix. This is set up so that a sampling of all calls to score() over a large set of sequences and folds will average 0.0 with a standard deviation of 1.0.

Version:

1.0, 4/1/98

Author:

JMC

Field Summary

static double	EQUAL
static double	NOTEQUAL

Constructor Summary

ScoreScaledID()

Method Summary

double	score(char a, char b) This scoring function depends only on the residue type
double	score(Monomer a, Monomer b) Returns EQUAL if monomer types are the same, otherwise NOTEQUAL.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

EQUAL

public static final double EQUAL

See Also:

Constant Field Values

NOTEQUAL

public static final double NOTEQUAL

See Also:

Constant Field Values

Constructor Detail

ScoreScaledID

public ScoreScaledID()

Method Detail

score

public double score(char a,
                    char b)

This scoring function depends only on the residue type

score

public double score(Monomer a,
                    Monomer b)

Returns EQUAL if monomer types are the same, otherwise NOTEQUAL.

Specified by:

score in interface ScoreFunction