org.strbio.mol.lib
Class ScoreScaledDefay

java.lang.Object
  org.strbio.mol.lib.ScoreDefay
      org.strbio.mol.lib.ScoreScaledDefay

All Implemented Interfaces:

ScoreFunction

public class ScoreScaledDefay
extends ScoreDefay
implements ScoreFunction

A scoring function from Tom Defay's algorithm, but rescaled. Defay & Cohen, JMB 262: 314-323. 1996. The table is scaled so that a sampling of all calls to score() over a large set of sequences and folds will average 0.0 with a standard deviation of 1.0.

Version:

1.0, 4/1/98

Author:

JMC

See Also:

ScoreDefay

Field Summary

Fields inherited from class org.strbio.mol.lib.ScoreDefay

defaultTable

Constructor Summary

ScoreScaledDefay()

ScoreScaledDefay(java.lang.String filename)

Method Summary

Methods inherited from class org.strbio.mol.lib.ScoreDefay

score, score

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.strbio.mol.lib.ScoreFunction

score

Constructor Detail

ScoreScaledDefay

public ScoreScaledDefay(java.lang.String filename)
                 throws java.io.IOException

Throws:

java.io.IOException

ScoreScaledDefay

public ScoreScaledDefay()