org.strbio.mol.lib
Class ScoreID

java.lang.Object
  org.strbio.mol.lib.ScoreID

All Implemented Interfaces:

ScoreFunction

public class ScoreID
extends java.lang.Object
implements ScoreFunction

A scoring function that returns a non-scaled identity matrix.

Version:

1.0, 4/2/98

Author:

JMC

See Also:

ScoreScaledID

Field Summary

static double	EQUAL
static double	NOTEQUAL

Constructor Summary

ScoreID()

Method Summary

double	score(char a, char b) This scoring function depends only on the residue type
double	score(Monomer a, Monomer b) Returns EQUAL if residue types are the same, otherwise NOTEQUAL.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

EQUAL

public static final double EQUAL

See Also:

Constant Field Values

NOTEQUAL

public static final double NOTEQUAL

See Also:

Constant Field Values

Constructor Detail

ScoreID

public ScoreID()

Method Detail

score

public double score(char a,
                    char b)

This scoring function depends only on the residue type

score

public double score(Monomer a,
                    Monomer b)

Returns EQUAL if residue types are the same, otherwise NOTEQUAL.

Specified by:

score in interface ScoreFunction