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java.lang.Object org.strbio.net.ProtParam
public class ProtParam
Class to access expasy.ch's ProtParam over the web.
Version 1.1, 5/4/7 - parse out pI and molecular weight from results Version 1.0, 8/16/1 - original version
Constructor Summary | |
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ProtParam()
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Method Summary | |
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static java.lang.String |
getAnnot(Protein p,
Printf outfile)
gets annot for a protein... returns null error processing or reading sequence. |
static java.lang.String |
getAnnot(java.lang.String seq,
Printf outfile)
gets annot for a protein... returns null error processing or reading sequence. |
static java.lang.String |
getBody(java.lang.String raw)
strip header and footer from raw output... |
static java.lang.String |
getCheckedAnnot(Protein p,
Printf outfile)
gets raw annot for a protein... returns null error processing or reading sequence |
static java.lang.String |
getCheckedAnnot(java.lang.String seq,
Printf outfile)
gets raw annot for a protein... returns null error processing or reading sequence |
static double |
getMolecularWeight(java.lang.String raw)
get molecular weight from raw output, or Double.NaN if not found |
static double |
getPI(java.lang.String raw)
get pI from raw output, or Double.NaN if not found |
static java.lang.String |
getRawAnnot(java.lang.String sequence,
Printf outfile)
Query the server for annotation data |
static java.lang.String |
getSequence(java.lang.String raw)
get sequence given in raw output, or null if not found |
static void |
main(java.lang.String[] argv)
Looks up sequences in file |
static void |
printRaw(java.lang.String sequence,
Printf outfile)
prints raw result of a search |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ProtParam()
Method Detail |
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public static java.lang.String getRawAnnot(java.lang.String sequence, Printf outfile)
public static final void printRaw(java.lang.String sequence, Printf outfile)
public static double getPI(java.lang.String raw)
public static double getMolecularWeight(java.lang.String raw)
public static final java.lang.String getSequence(java.lang.String raw)
public static final java.lang.String getBody(java.lang.String raw)
public static final java.lang.String getCheckedAnnot(java.lang.String seq, Printf outfile)
public static final java.lang.String getCheckedAnnot(Protein p, Printf outfile)
public static final java.lang.String getAnnot(java.lang.String seq, Printf outfile)
public static final java.lang.String getAnnot(Protein p, Printf outfile)
public static final void main(java.lang.String[] argv)
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