All Classes
AboutDialog
Access
ActionJButton
Alces
Align
Alignment
AlignmentDependent
AlignmentParameters
AlignmentParametersEA
AlignmentSet
AlignmentStats
AppletJury
AppletJury.LoadProgressIndicator
Atom
AtomNode
AxisScale
BackbonePotential
BarLegend
BarPlot
Bin
Bin2D
Blast
BlastAdapter
BlastClient
BlastConstants
BlastNCBI
BlastNCBI2
BlastP
BlastPAdapter
BlastProtein
BlastWeb
CATH
CATHInfo
CGOptimizer
CGOptimizer.Optimizable
CirclePoint
ClickablePointPlot
ClickablePointPlot.ClickListener
ClustalW
ColorScale
ColorScale.BlackScale
ColorScale.BlendScale
ColorScale.BlueScale
ColorScale.GreenScale
ColorScale.RainbowScale
ColorScale.RainbowScale2
ColorScale.RedScale
ColorScale.WhiteScale
ColorScaleLegend
CompareFolds
CompileJuryScript
ConvertProtein
CorrectMatrix
Data
Data.InfoEnumeration
DayhoffMatrices
DensityPlot
Description
DHalfMatrix
DLinkedList
DLinkedList.Node
DMatrix
DotPoint
DSSP
DVector
DVectorSet
Ecocyc
Entrez
EOFStringReader
FBin
FHalfMatrix
FindProteins
FMatrix
FoldLibrary
FRParameters
FRParametersNode
FruitFly
FVector
GapAffine
GapConstant
GapDistanceDependent
GapModel
GapModelAdapter
GapRAF
GetChainSeqs
GetSEQRES
Graph2D
Graph2D.ClickListener
Graphable2D
Graphable3D
GUIApp
HelpFrame
Hooke
Hooke.Optimizable
HTML
IMatrix
Info
IO
IVector
JMC
JMC2ary
JMCScrollPane
JMCThreadMethod
JMCThreadMethod2
JThread
JThreadServer
JThreadText
Jury
Jury.ProgressIndicator
LargeJury
Legend
Ls
MakeModeller
MakeRAF
Malfe
MaxSub
MediumAppletJury
MediumJury
Melting
Mfold
Minarea
MinareaAlign
MinareaResults
Model
Modeller
Modify2ary
Molecule
Monomer
Muscle
NeuralNet
NeuralNet.Trainable
NSPred2ary
Nucleotide
OldBufferedPrintfTextArea
OldPrintfJLabel
OldPrintfJTextArea
OldPrintfTextArea
OptimalAAParameters
OptimalAAParametersFR
OptimalFRParameters
PCPRes
PCPSet
PDB
PDBInfo
PointColorPlot
PointLegend
PointPlot
PointType
Polymer
PolymerProperties
PolymerSet
PolymerSet.PolymerEnumeration
Pred2ary
Pred2ary
Pred2aryApplet
Pred2aryAppletFrame
Pred2aryText
PredClassProfile
PredictionSet
Primer
Primer3
PrimerSet
Printf
PrintfJLabel
PrintfJTextArea
PrintfStream
PrintfTee
PrintfTextArea
PrintfWriter
Profile
ProfileDisplayArea
ProfileGUIApp
ProfilePSI
ProfilePSISet
ProfileSet
ProfRes
ProfResPSI
Program
Protein
ProteinFilter
ProteinInfo
ProteinSet
ProteinStructureInfo
ProteinTools
ProtParam
PSIBlast
PSIBlastMatrices
PSIBlastNCBI
PSIBlastP
PSIBlastP2
PSIBlastWeb
PubMed
RAFProtein
RAFResidue
Residue
Sampler
SCOP
SCOPInfo
Score2ary
ScoreAlphaTau
ScoreAveragePSIBlast
ScoreAverageReversePSIBlast
ScoreBlosum62
ScoreDefay
ScoreFischer
ScoreFunction
ScoreID
ScoreJDB10
ScoreList
ScorePairwiseDistance
ScorePhiPsi
ScorePred2ary
ScorePredFreq
ScorePSIBlast
ScoreReversePSIBlast
ScoreScaledDefay
ScoreScaledID
ScoreSetup
ScoreSetup2
ScoreSippl90
ScoreUFSippl90
SimMatrix
Sippl90
SmallAppletJury
SmallJury
SplitProteins
SQLUtil
SSPredictor
StandardJury
StatsMatrix
StringUtil
TargetDB
TBlastN
ThreadMethod
ThreadResults
ThreadSet
ThreeDPSSM
TOMFoldLibrary
TPSet
TPSet.NetVars
TrainingSet
UnfilledCirclePoint
UserFoldLibrary
VarTom
XAxisScale
YAxisScale