Uses of Interface
org.strbio.mol.lib.PSIBlast

Packages that use PSIBlast

org.strbio.local	These classes are for running or exchanging data with local programs (other programs installed on your computer).
org.strbio.mol.lib	These classes represent conceptual objects used in structural biology algorithms.
org.strbio.net	These classes are for running or exchanging data with non-local programs (i.e., programs that you run by submitting data to a web page).

Uses of PSIBlast in org.strbio.local

Classes in org.strbio.local that implement PSIBlast

class	PSIBlastP Runs a local copy of psiblast.
class	PSIBlastP2 Runs a local copy of psiblast.

Uses of PSIBlast in org.strbio.mol.lib

Fields in org.strbio.mol.lib declared as PSIBlast

protected PSIBlast	JMCThreadMethod2.blast
protected PSIBlast	JMCThreadMethod.blast

Constructors in org.strbio.mol.lib with parameters of type PSIBlast

JMCThreadMethod(FoldLibrary lib, PSIBlast b)
Use a user-specified library and psiblast method

JMCThreadMethod(PSIBlast b)
Use a user-specified psiblast method

JMCThreadMethod2(FoldLibrary baseLib, FoldLibrary extraLib, PSIBlast b)
Use a user-specified base library, extra library and psiblast method.

JMCThreadMethod2(FoldLibrary lib, PSIBlast b)
Use a user-specified library and psiblast method

JMCThreadMethod2(PSIBlast b)
Use a user-specified psiblast method

Uses of PSIBlast in org.strbio.net

Classes in org.strbio.net that implement PSIBlast

class	PSIBlastNCBI Does a PSI-BLAST search in the NR database at NCBI, using the main web gateway.
class	PSIBlastWeb Does a PSI-BLAST search in the NR database over the web.