|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use PSIBlast | |
---|---|
org.strbio.local | These classes are for running or exchanging data with local programs (other programs installed on your computer). |
org.strbio.mol.lib | These classes represent conceptual objects used in structural biology algorithms. |
org.strbio.net | These classes are for running or exchanging data with non-local programs (i.e., programs that you run by submitting data to a web page). |
Uses of PSIBlast in org.strbio.local |
---|
Classes in org.strbio.local that implement PSIBlast | |
---|---|
class |
PSIBlastP
Runs a local copy of psiblast. |
class |
PSIBlastP2
Runs a local copy of psiblast. |
Uses of PSIBlast in org.strbio.mol.lib |
---|
Fields in org.strbio.mol.lib declared as PSIBlast | |
---|---|
protected PSIBlast |
JMCThreadMethod2.blast
|
protected PSIBlast |
JMCThreadMethod.blast
|
Constructors in org.strbio.mol.lib with parameters of type PSIBlast | |
---|---|
JMCThreadMethod(FoldLibrary lib,
PSIBlast b)
Use a user-specified library and psiblast method |
|
JMCThreadMethod(PSIBlast b)
Use a user-specified psiblast method |
|
JMCThreadMethod2(FoldLibrary baseLib,
FoldLibrary extraLib,
PSIBlast b)
Use a user-specified base library, extra library and psiblast method. |
|
JMCThreadMethod2(FoldLibrary lib,
PSIBlast b)
Use a user-specified library and psiblast method |
|
JMCThreadMethod2(PSIBlast b)
Use a user-specified psiblast method |
Uses of PSIBlast in org.strbio.net |
---|
Classes in org.strbio.net that implement PSIBlast | |
---|---|
class |
PSIBlastNCBI
Does a PSI-BLAST search in the NR database at NCBI, using the main web gateway. |
class |
PSIBlastWeb
Does a PSI-BLAST search in the NR database over the web. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |