Uses of Class
org.strbio.mol.Molecule

Packages that use Molecule

org.strbio.mol	These classes represent objects or concepts useful to structural biologists.
org.strbio.mol.lib.pred2ary	These classes represent conceptual objects used in the Pred2ary program, which are probably not very useful for other purposes.
org.strbio.raf	These classes are related to the RAF file format used by the ASTRAL database.

Uses of Molecule in org.strbio.mol

Subclasses of Molecule in org.strbio.mol

class	Polymer Class to represent a linear, unbranched polymer.
class	Profile Class to represent a protein with profile information.
class	ProfilePSI Class to represent a profile with position specific information (PSI), such as PSI-BLAST info and JMC's backbone potential.
class	Protein Class to represent a single protein.

Methods in org.strbio.mol with parameters of type Molecule

void	Molecule.copyAtoms(Molecule q) copy the atoms from another molecule.

Constructors in org.strbio.mol with parameters of type Molecule

Molecule(Molecule q)
copy another molecule, including the atoms.

Uses of Molecule in org.strbio.mol.lib.pred2ary

Subclasses of Molecule in org.strbio.mol.lib.pred2ary

class

PredClassProfile Class to represent a single protein, with class routines and lots of stats.

Uses of Molecule in org.strbio.raf

Subclasses of Molecule in org.strbio.raf

class

RAFProtein Modified version of org.strbio.mol.Protein... part of this might might be ported back to Protein.