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Packages that use Molecule | |
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org.strbio.mol | These classes represent objects or concepts useful to structural biologists. |
org.strbio.mol.lib.pred2ary | These classes represent conceptual objects used in the Pred2ary program, which are probably not very useful for other purposes. |
org.strbio.raf | These classes are related to the RAF file format used by the ASTRAL database. |
Uses of Molecule in org.strbio.mol |
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Subclasses of Molecule in org.strbio.mol | |
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class |
Polymer
Class to represent a linear, unbranched polymer. |
class |
Profile
Class to represent a protein with profile information. |
class |
ProfilePSI
Class to represent a profile with position specific information (PSI), such as PSI-BLAST info and JMC's backbone potential. |
class |
Protein
Class to represent a single protein. |
Methods in org.strbio.mol with parameters of type Molecule | |
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void |
Molecule.copyAtoms(Molecule q)
copy the atoms from another molecule. |
Constructors in org.strbio.mol with parameters of type Molecule | |
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Molecule(Molecule q)
copy another molecule, including the atoms. |
Uses of Molecule in org.strbio.mol.lib.pred2ary |
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Subclasses of Molecule in org.strbio.mol.lib.pred2ary | |
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class |
PredClassProfile
Class to represent a single protein, with class routines and lots of stats. |
Uses of Molecule in org.strbio.raf |
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Subclasses of Molecule in org.strbio.raf | |
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class |
RAFProtein
Modified version of org.strbio.mol.Protein... part of this might might be ported back to Protein. |
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