Uses of Class
org.strbio.mol.Molecule

Packages that use Molecule
org.strbio.mol These classes represent objects or concepts useful to structural biologists. 
org.strbio.mol.lib.pred2ary These classes represent conceptual objects used in the Pred2ary program, which are probably not very useful for other purposes. 
org.strbio.raf These classes are related to the RAF file format used by the ASTRAL database
 

Uses of Molecule in org.strbio.mol
 

Subclasses of Molecule in org.strbio.mol
 class Polymer
          Class to represent a linear, unbranched polymer.
 class Profile
          Class to represent a protein with profile information.
 class ProfilePSI
          Class to represent a profile with position specific information (PSI), such as PSI-BLAST info and JMC's backbone potential.
 class Protein
          Class to represent a single protein.
 

Methods in org.strbio.mol with parameters of type Molecule
 void Molecule.copyAtoms(Molecule q)
          copy the atoms from another molecule.
 

Constructors in org.strbio.mol with parameters of type Molecule
Molecule(Molecule q)
          copy another molecule, including the atoms.
 

Uses of Molecule in org.strbio.mol.lib.pred2ary
 

Subclasses of Molecule in org.strbio.mol.lib.pred2ary
 class PredClassProfile
          Class to represent a single protein, with class routines and lots of stats.
 

Uses of Molecule in org.strbio.raf
 

Subclasses of Molecule in org.strbio.raf
 class RAFProtein
          Modified version of org.strbio.mol.Protein... part of this might might be ported back to Protein.