Uses of Class
org.strbio.math.IVector

Packages that use IVector
org.strbio.math These classes perform functions related to mathematics and statistics. 
org.strbio.mol These classes represent objects or concepts useful to structural biologists. 
org.strbio.mol.lib These classes represent conceptual objects used in structural biology algorithms. 
 

Uses of IVector in org.strbio.math
 

Subclasses of IVector in org.strbio.math
 class Bin
          a class which does 1-D histogram-bins.
 class Bin2D
          This saves samples pairs of data, and remembers some stats about the y values for each bin.
 class FBin
          a class which does 1-D histogram-FBins.
 class Sampler
          This is a special case of Bin that samples data and can later return statistics like average, standard deviation.
 

Methods in org.strbio.math that return IVector
static IVector IVector.add(IVector a, IVector b)
          Adds two IVector's and returns a new IVector containing the sum.
 IVector IVector.cross(IVector x)
          Returns the cross product of multiplying this with another vector.
static IVector IVector.cross(IVector x, IVector y)
          Returns the cross product of multiplying two vectors.
 IVector IVector.eliminate(int pos)
          Return a copy of the vector with one position removed.
 IVector DVector.findNClosest(int n, double v)
          What are the indices of the N closest values to a given double?
 IVector DVectorSet.findNClosest(int n, DVector v)
          What are the indices of the N closest values to a DVector?
 IVector FVector.findNClosest(int n, float v)
          What are the indices of the N closest values to a given float?
static IVector IVector.multiply(int b, IVector a)
          Multiplies a IVector by an int and returns a new IVector containing the result.
static IVector IVector.multiply(IVector a, int b)
          Multiplies a IVector by an int and returns a new IVector containing the result.
static IVector IVector.reverse(IVector x)
          returns a vector which is the reverse of this one.
 IVector FVector.sort()
          returns a vector of indices to sort an FVector (small -> large).
 IVector IVector.sort()
          returns a vector of indices to sort an IVector (small -> large).
 IVector DVector.sort()
          returns a vector of indices to sort an DVector (small -> large).
static IVector IVector.subtract(IVector a, IVector b)
          Subtracts one IVector's from another returns a new IVector containing the difference.
 

Methods in org.strbio.math with parameters of type IVector
 void IVector.add(IVector x)
          Adds another IVector to this one.
static IVector IVector.add(IVector a, IVector b)
          Adds two IVector's and returns a new IVector containing the sum.
 IVector IVector.cross(IVector x)
          Returns the cross product of multiplying this with another vector.
static IVector IVector.cross(IVector x, IVector y)
          Returns the cross product of multiplying two vectors.
 int IVector.dot(IVector x)
          Returns the dot product of multiplying this with another vector.
static int IVector.dot(IVector x, IVector y)
          Returns the dot product of multiplying two vectors.
static IVector IVector.multiply(int b, IVector a)
          Multiplies a IVector by an int and returns a new IVector containing the result.
static IVector IVector.multiply(IVector a, int b)
          Multiplies a IVector by an int and returns a new IVector containing the result.
static IVector IVector.reverse(IVector x)
          returns a vector which is the reverse of this one.
 void IVector.subtract(IVector x)
          Subtracts another IVector from this one.
static IVector IVector.subtract(IVector a, IVector b)
          Subtracts one IVector's from another returns a new IVector containing the difference.
 

Constructors in org.strbio.math with parameters of type IVector
DVector(IVector x)
          copies an IVector, copying the data and casting to doubles.
FVector(IVector x)
          copies an IVector, copying the data and casting to floats.
IVector(IVector x)
          copies another IVector.
 

Uses of IVector in org.strbio.mol
 

Methods in org.strbio.mol that return IVector
 IVector ThreadSet.getSortedScores(int i)
          Get an IVector of sorted probabilities for one of the proteins in the seqs set, from most to least likely, or null if this has not been calculated.
 

Uses of IVector in org.strbio.mol.lib
 

Fields in org.strbio.mol.lib declared as IVector
 IVector ThreadResults.sorted
          A sorted vector of the probabilities, from highest to lowest.
 

Methods in org.strbio.mol.lib that return IVector
 IVector Sippl90.getRaw(char a, char b, int k)
          Returns a vector of raw N(a,b,k)