Uses of Class
org.strbio.mol.lib.FoldLibrary

Packages that use FoldLibrary

org.strbio.mol.lib

These classes represent conceptual objects used in structural biology algorithms.

Uses of FoldLibrary in org.strbio.mol.lib

Subclasses of FoldLibrary in org.strbio.mol.lib

class	TOMFoldLibrary The TOM fold library.
class	UserFoldLibrary A standard fold library for threading, loaded in by the user.

Fields in org.strbio.mol.lib declared as FoldLibrary

protected FoldLibrary	JMCThreadMethod2.extraLibrary
protected FoldLibrary	JMCThreadMethod2.library
protected FoldLibrary	JMCThreadMethod.library
FoldLibrary	ThreadResults.library The library the threading was done on.

Methods in org.strbio.mol.lib with parameters of type FoldLibrary

void	JMCThreadMethod2.setBaseLibrary(FoldLibrary lib) Set a custom BASE fold library.

Constructors in org.strbio.mol.lib with parameters of type FoldLibrary

JMCThreadMethod(FoldLibrary lib)
Use a user-specified fold library.

JMCThreadMethod(FoldLibrary lib, PSIBlast b)
Use a user-specified library and psiblast method

JMCThreadMethod2(FoldLibrary lib)
Use a user-specified fold library.

JMCThreadMethod2(FoldLibrary baseLib, FoldLibrary extraLib, PSIBlast b)
Use a user-specified base library, extra library and psiblast method.

JMCThreadMethod2(FoldLibrary lib, PSIBlast b)
Use a user-specified library and psiblast method