org.strbio.mol.lib
Interface ScoreSetup2

All Known Implementing Classes:

ScoreAveragePSIBlast, ScoreSippl90, ScoreUFSippl90

public interface ScoreSetup2

Interface for scoring functions that need to be set up before being used on a given seq/fold pair. This might be caused by large memory overhead.

Version:

1.0, 1/7/00

Author:

JMC

See Also:

ScoreList, ScoreFunction, ScoreSetup

Method Summary

void	finished(Polymer seq, Polymer fold) This function is called when you are done using the function on a pair.
void	setup(Polymer seq, Polymer fold) This function is to set up the scoring function for use on a pair.

Method Detail

setup

void setup(Polymer seq,
           Polymer fold)

This function is to set up the scoring function for use on a pair.

finished

void finished(Polymer seq,
              Polymer fold)

This function is called when you are done using the function on a pair.