org.strbio.mol.lib
Interface AlignmentDependent
- All Known Implementing Classes:
- ScoreUFSippl90
public interface AlignmentDependent
Interface for scoring functions that are dependent on the rest
of the alignment. These cannot be used in Needleman-Wunsch scoring
schemes.
- Version:
- 1.0, 1/11/00
- Author:
- JMC
- See Also:
ScoreList
,
ScoreFunction
,
ScoreSetup
setAlignment
void setAlignment(Alignment al)
- This function is called to provide the alignment.
Calls to the scoring function are evaluated on the basis of this
alignment.