Uses of Class
org.strbio.mol.AlignmentSet

Packages that use AlignmentSet

org.strbio.mol

These classes represent objects or concepts useful to structural biologists.

Uses of AlignmentSet in org.strbio.mol

Methods in org.strbio.mol that return AlignmentSet

AlignmentSet	ThreadSet.addStrMatch(Polymer seq, Polymer fold) add a single structural match to the set.
AlignmentSet	ThreadSet.getStrMatch(int i) Return a given structural match, or null if out of range.
AlignmentSet	ThreadSet.getStrMatch(Polymer seq, Polymer fold) Get first structural match, if one exists, with a given seq and fold, or null if one doesn't exist.

Methods in org.strbio.mol with parameters of type AlignmentSet

void	ThreadSet.addStrMatch(AlignmentSet aSet) add a single structural match to the set, created by the user