org.strbio.mol
Class PrimerSet

java.lang.Object
  org.strbio.mol.PrimerSet

public class PrimerSet
extends java.lang.Object

Class to represent a set of primers used to clone one gene

Version:

1.0, 6/16/06

Author:

JMC

Field Summary

Primer	fwd forward primer
java.lang.String	product product sequence
Primer	rvs reverse primer

Constructor Summary

PrimerSet()
new PrimerSet with no info

PrimerSet(PrimerSet p)
copy another primer set

Method Summary

void	calcTm() calculate tm using Melting
void	reverseIndex(int dnaLength) reset index to be the index from the other end of the DNA (usueful if you reverse complement)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

fwd

public Primer fwd

forward primer

rvs

public Primer rvs

reverse primer

product

public java.lang.String product

product sequence

Constructor Detail

PrimerSet

public PrimerSet()

new PrimerSet with no info

PrimerSet

public PrimerSet(PrimerSet p)

copy another primer set

Method Detail

calcTm

public void calcTm()

calculate tm using Melting

reverseIndex

public void reverseIndex(int dnaLength)

reset index to be the index from the other end of the DNA (usueful if you reverse complement)