Package org.strbio.app

These classes are stand-alone applications.

See:
Description

Class Summary

Align	Shows alignment of a given sequence with a fold.
BlastProtein	Run Blast on a protein (or set).
CompareFolds	Computes comparison scores for sets of sequences and folds.
CompileJuryScript	Compile a jury script for Pred2aryJury.
ConvertProtein	Convert proteins between file formats.
FindProteins	Finds proteins in a list.
GetChainSeqs	get sequences/numbering from pdb for chains
JMC2ary	Train and test secondary structure/class networks, using profiles.
JThread	Thread one or more proteins.
JThreadServer	Thread one or more proteins.
JThreadText	Thread one or more proteins.
MakeModeller	Takes a set of single chains; runs clustalw and outputs a bunch of modeller input files and the clustalw alignment
MinareaAlign	This does automatic minarea alignment and superposition on 2 sets of proteins.
Model	Models a set of proteins based on saved alignments.
Modify2ary	Modify 2ary structure prediction Version 1.0, 11/22/00 - original version
NSPred2ary	Predict secondary structure/class, using profiles.
Pred2ary	Predict secondary structure/class, using profiles.
Pred2aryText	Predict secondary structure/class, using profiles.
SplitProteins	Split protein set into several.

Package org.strbio.app Description

These classes are stand-alone applications.