org.strbio.net
Class BlastNCBI
java.lang.Object
org.strbio.mol.lib.BlastAdapter
org.strbio.net.BlastWeb
org.strbio.net.BlastNCBI
- All Implemented Interfaces:
- Blast
- Direct Known Subclasses:
- BlastNCBI2
public class BlastNCBI
- extends BlastWeb
Does a BlastP search in the NR database at NCBI, using the
main web gateway.
Version 1.2, 1/29/99 - moved most stuff to BlastWeb.
Version 1.11, 1/21/99 - added outfile
Version 1.1, 1/19/99 - moved read routines into Profile
Version 1.0, 11/30/98 - original version
- Version:
- 1.11, 1/21/99
- Author:
- JMC
Constructor Summary |
BlastNCBI()
Initialize with no information; you still have to call
setQuery before starting Blast. |
BlastNCBI(Protein p)
Initialize with a given protein. |
BlastNCBI(java.lang.String sequence)
Initialize with a given query sequence. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
BlastNCBI
public BlastNCBI()
- Initialize with no information; you still have to call
setQuery before starting Blast.
BlastNCBI
public BlastNCBI(java.lang.String sequence)
- Initialize with a given query sequence.
BlastNCBI
public BlastNCBI(Protein p)
- Initialize with a given protein.