org.strbio.net
Class BlastNCBI

java.lang.Object
  extended by org.strbio.mol.lib.BlastAdapter
      extended by org.strbio.net.BlastWeb
          extended by org.strbio.net.BlastNCBI
All Implemented Interfaces:
Blast
Direct Known Subclasses:
BlastNCBI2

public class BlastNCBI
extends BlastWeb

Does a BlastP search in the NR database at NCBI, using the main web gateway.

  Version 1.2, 1/29/99 - moved most stuff to BlastWeb.
  Version 1.11, 1/21/99 - added outfile
  Version 1.1, 1/19/99 - moved read routines into Profile
  Version 1.0, 11/30/98 - original version
  

Version:
1.11, 1/21/99
Author:
JMC

Field Summary
 
Fields inherited from class org.strbio.mol.lib.BlastAdapter
query
 
Constructor Summary
BlastNCBI()
          Initialize with no information; you still have to call setQuery before starting Blast.
BlastNCBI(Protein p)
          Initialize with a given protein.
BlastNCBI(java.lang.String sequence)
          Initialize with a given query sequence.
 
Method Summary
 
Methods inherited from class org.strbio.net.BlastWeb
blastAll, blastGetInitial, blastGetResult, blastRaw, getBaseURL, setBaseURL
 
Methods inherited from class org.strbio.mol.lib.BlastAdapter
blastProfile, blastProteinSet, setQuery, setQuery
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BlastNCBI

public BlastNCBI()
Initialize with no information; you still have to call setQuery before starting Blast.


BlastNCBI

public BlastNCBI(java.lang.String sequence)
Initialize with a given query sequence.


BlastNCBI

public BlastNCBI(Protein p)
Initialize with a given protein.