org.strbio.mol.lib.pred2ary
Class StandardJury

java.lang.Object
  org.strbio.mol.lib.pred2ary.Jury
      org.strbio.mol.lib.pred2ary.StandardJury

Direct Known Subclasses:

AppletJury, LargeJury, MediumJury, SmallJury

public class StandardJury
extends Jury

Class that implements a jury of secondary structure prediction networks. This is never in memory at the same time due to size, so all operations are closely linked to operations on streams (either coming over a network, or in a file)

  Version 1.0, 6/4/98 - original version
  

Version:

1.0, 6/4/98

Author:

JMC

Nested Class Summary

Nested classes/interfaces inherited from class org.strbio.mol.lib.pred2ary.Jury

Jury.ProgressIndicator

Field Summary

Fields inherited from class org.strbio.mol.lib.pred2ary.Jury

fileName, nJurors, outfile, progress

Constructor Summary

StandardJury(java.lang.String filename)
Create a new jury, given the name of the binary input file.

Method Summary

boolean	exists() see if the file exists on this system.
java.io.DataInputStream	getBinaryData() Open jury for processing.

Methods inherited from class org.strbio.mol.lib.pred2ary.Jury

countJurors, doPrediction, getName, nJurors

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StandardJury

public StandardJury(java.lang.String filename)

Create a new jury, given the name of the binary input file.

Method Detail

exists

public boolean exists()

see if the file exists on this system. For standard juries, this is done by looking at a file which replaces ".bin" with ".ok", because opening the actual file might take a LONG time on some (Windows) systems.

Overrides:

exists in class Jury

getBinaryData

public java.io.DataInputStream getBinaryData()
                                      throws java.io.IOException

Open jury for processing.

Overrides:

getBinaryData in class Jury

Throws:

java.io.IOException