org.strbio.mol.lib
Interfaces 
AlignmentDependent
Blast
GapModel
PSIBlast
ScoreFunction
ScoreSetup
ScoreSetup2
SSPredictor
ThreadMethod
Classes 
AlignmentParameters
AlignmentParametersEA
BackbonePotential
BlastAdapter
BlastConstants
DayhoffMatrices
FoldLibrary
FRParameters
FRParametersNode
GapAffine
GapConstant
GapDistanceDependent
GapModelAdapter
JMCThreadMethod
JMCThreadMethod2
MinareaResults
OptimalAAParameters
OptimalAAParametersFR
OptimalFRParameters
Pred2ary
ProteinFilter
PSIBlastMatrices
Score2ary
ScoreAlphaTau
ScoreAveragePSIBlast
ScoreAverageReversePSIBlast
ScoreBlosum62
ScoreDefay
ScoreFischer
ScoreID
ScoreJDB10
ScoreList
ScorePairwiseDistance
ScorePhiPsi
ScorePred2ary
ScorePredFreq
ScorePSIBlast
ScoreReversePSIBlast
ScoreScaledDefay
ScoreScaledID
ScoreSippl90
ScoreUFSippl90
Sippl90
ThreadResults
TOMFoldLibrary
UserFoldLibrary