Uses of Class
org.strbio.mol.lib.BackbonePotential

Packages that use BackbonePotential
org.strbio.mol These classes represent objects or concepts useful to structural biologists. 
org.strbio.mol.lib These classes represent conceptual objects used in structural biology algorithms. 
 

Uses of BackbonePotential in org.strbio.mol
 

Methods in org.strbio.mol with parameters of type BackbonePotential
 void ProfResPSI.setupBackbonePotential(boolean alpha, BackbonePotential pot)
          set up the BackbonePotential scoring matrices
 void ProfilePSI.setupBackbonePotential(boolean alpha, BackbonePotential pot)
          set up the BackbonePotential scoring matrices for all residues.
 void ProfResPSI.setupBackbonePotential(boolean alpha, BackbonePotential pot, double offset, double scale)
          set up the BackbonePotential scoring matrices
 void ProfilePSI.setupBackbonePotential(boolean alpha, BackbonePotential pot, double offset, double scale)
          set up the BackbonePotential scoring matrices for all residues
 

Uses of BackbonePotential in org.strbio.mol.lib
 

Methods in org.strbio.mol.lib that return BackbonePotential
 BackbonePotential ScorePhiPsi.getPotential()
          Return the current potential.
 

Methods in org.strbio.mol.lib with parameters of type BackbonePotential
 void ScorePhiPsi.setPotential(BackbonePotential bb)
          Use a pre-initialized BackbonePotential.
 

Constructors in org.strbio.mol.lib with parameters of type BackbonePotential
ScorePhiPsi(BackbonePotential bb)
          initialize scoring system from a pre-initialized BackbonePotential