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Packages that use BackbonePotential | |
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org.strbio.mol | These classes represent objects or concepts useful to structural biologists. |
org.strbio.mol.lib | These classes represent conceptual objects used in structural biology algorithms. |
Uses of BackbonePotential in org.strbio.mol |
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Methods in org.strbio.mol with parameters of type BackbonePotential | |
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void |
ProfResPSI.setupBackbonePotential(boolean alpha,
BackbonePotential pot)
set up the BackbonePotential scoring matrices |
void |
ProfilePSI.setupBackbonePotential(boolean alpha,
BackbonePotential pot)
set up the BackbonePotential scoring matrices for all residues. |
void |
ProfResPSI.setupBackbonePotential(boolean alpha,
BackbonePotential pot,
double offset,
double scale)
set up the BackbonePotential scoring matrices |
void |
ProfilePSI.setupBackbonePotential(boolean alpha,
BackbonePotential pot,
double offset,
double scale)
set up the BackbonePotential scoring matrices for all residues |
Uses of BackbonePotential in org.strbio.mol.lib |
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Methods in org.strbio.mol.lib that return BackbonePotential | |
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BackbonePotential |
ScorePhiPsi.getPotential()
Return the current potential. |
Methods in org.strbio.mol.lib with parameters of type BackbonePotential | |
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void |
ScorePhiPsi.setPotential(BackbonePotential bb)
Use a pre-initialized BackbonePotential. |
Constructors in org.strbio.mol.lib with parameters of type BackbonePotential | |
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ScorePhiPsi(BackbonePotential bb)
initialize scoring system from a pre-initialized BackbonePotential |
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