org.strbio.mol.lib
Class ScoreScaledDefay

java.lang.Object
  extended by org.strbio.mol.lib.ScoreDefay
      extended by org.strbio.mol.lib.ScoreScaledDefay
All Implemented Interfaces:
ScoreFunction

public class ScoreScaledDefay
extends ScoreDefay
implements ScoreFunction

A scoring function from Tom Defay's algorithm, but rescaled. Defay & Cohen, JMB 262: 314-323. 1996. The table is scaled so that a sampling of all calls to score() over a large set of sequences and folds will average 0.0 with a standard deviation of 1.0.

Version:
1.0, 4/1/98
Author:
JMC
See Also:
ScoreDefay

Field Summary
 
Fields inherited from class org.strbio.mol.lib.ScoreDefay
defaultTable
 
Constructor Summary
ScoreScaledDefay()
           
ScoreScaledDefay(java.lang.String filename)
           
 
Method Summary
 
Methods inherited from class org.strbio.mol.lib.ScoreDefay
score, score
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.strbio.mol.lib.ScoreFunction
score
 

Constructor Detail

ScoreScaledDefay

public ScoreScaledDefay(java.lang.String filename)
                 throws java.io.IOException
Throws:
java.io.IOException

ScoreScaledDefay

public ScoreScaledDefay()