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java.lang.Object org.strbio.mol.PolymerProperties
public class PolymerProperties
Class containing all possible Polymer properties, in one place, rather than spreading them out among many files.
Version 1.1, 3/31/00 - separated PRECALC_ANGLES into PRECALC_PHIPSI and PRECALC_ALPHATAU Version 1.0, 10/14/99 - original version
Field Summary | |
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static int |
BACKBONE_POTENTIAL
ProfilePSI property: is there a local secondary structure prediction based potential? |
static int |
KNOWN_2ARY
Protein property: is there known secondary structure? |
static int |
KNOWN_ATOMS
Polymer property: is there information on atomic coordinates? |
static int |
KNOWN_ENV
Protein property: is there information on environmental class? |
static int |
MULTI_CHAIN
Polymer property: Are there multiple chains? |
static int |
PRECALC_ALPHATAU
Protein property: is there precalculated information on backbone alpha/tau dihedral angles? |
static int |
PRECALC_CW
Profile property: are R&S Conservation weights calculated? |
static int |
PRECALC_FREQ
Profile property: precalculated frequencies |
static int |
PRECALC_PHIPSI
Protein property: is there precalculated information on backbone phi/psi dihedral angles? |
static int |
PRED_2ARY
Protein property: is there a secondary structure prediction? |
static int |
PSI_BLAST_MATRIX
ProfilePSI property: is there a psi-blast matrix? |
static int |
VAR_TOM_INFO
Protein property: is there TOM information on residue variability? |
Constructor Summary | |
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PolymerProperties()
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Method Summary |
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final int KNOWN_ATOMS
public static final int MULTI_CHAIN
public static final int KNOWN_2ARY
public static final int PRED_2ARY
public static final int PRECALC_PHIPSI
public static final int KNOWN_ENV
public static final int VAR_TOM_INFO
public static final int PSI_BLAST_MATRIX
public static final int BACKBONE_POTENTIAL
public static final int PRECALC_CW
public static final int PRECALC_FREQ
public static final int PRECALC_ALPHATAU
Constructor Detail |
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public PolymerProperties()
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