org.strbio.app
Class Align
java.lang.Object
org.strbio.app.Align
public class Align
- extends java.lang.Object
Shows alignment of a given sequence with a fold. Run with no options
to see valid command line options.
Version 1.5, 1/30/1 - would sometimes incorrectly report ASns as ASpc
Version 1.47, 1/8/1 - added -showmodeller
Version 1.46, 9/7/00 - added -renum hacks
Version 1.45, 8/28/00 - added -op support for casp format
Version 1.44, 1/7/00 - added Sippl90 potential
Version 1.43, 11/11/99 - added apsiblast, rpsiblast, arpsiblast
Version 1.42, 10/28/99 - precalculates dihedrals where needed
Version 1.41, 7/8/99 - added -saveparam option, -resume option
Version 1.4, 6/4/99 - added -allmatches option
Version 1.39, 5/18/99 - added -jdb option
Version 1.38, 3/11/99 - added -using option
Version 1.37, 2/26/99 - adapted to new GapModel API.
Version 1.36, 2/25/99 - ident is no longer scaled.
Version 1.35, 2/24/99 - added optimization for ASns
Version 1.34, 2/1/99 - added Blast scoring options
Version 1.33, 11/9/98 - can save predicted alignment
Version 1.32, 9/2/98 - added table option to defay matrix
Version 1.31, 8/3/98 - changed possible JMCPotential reference states
Version 1.3, 7/9/98 - added separate, sigma to JMCPotential
Version 1.2, 4/7/98 - can use substitution matrices, also fixed docs.
Version 1.1, 4/3/98 - new scoring function scheme.
Version 1.0, 3/25/98 - adapted from align 1.592
- Version:
- 1.5, 1/30/1
- Author:
- JMC
- See Also:
ThreadSet
Constructor Summary |
Align()
|
Method Summary |
static void |
main(java.lang.String[] argv)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Align
public Align()
main
public static final void main(java.lang.String[] argv)